Publications

Gill, E.E.; Harari, S.; Feng, A.; Brinkman, F.S.L.; Otto, S. (2024) SMDP: SARS-CoV-2 Mutation Distribution Profiler for rapid estimation of mutational histories of unusual lineages.  arXiv.

Gill, E.E.; Jia, B.; Murall, C.L.; Poujol, R.; Anwar, M.Z.; John, N.S.; Richardsson, J. et al. (2024) The Canadian VirusSeq Data Portal & Duotang: open resources for SARS-CoV-2 viral sequences and genomic epidemiology. Microbial Genomics (accepted). Available on arXiv.

Savic Kallesoe, S.A.; Rabbani, T.; Gill, E.E.; Brinkman, F.; Griffiths, E.J.; Zawati, M.; Liu, H.; Palmour, N.; Joly, Y.; Hsiao, W.W.L. (2023) Canadians’ opinions towards COVID-19 data-sharing: a national cross-sectional survey. BMJ Open 13, e066418.

Song, L.; Liu, H.; Brinkman, F.S.L.; Gill, E.; Griffiths, E.J.; Hsiao, W.W.L.; Savić-Kallesøe, S.; Moreira. S.; Van Domselaar, G.; Zawati, M.H.; Joly, Y. (2021) Addressing Privacy Concerns in Sharing Viral Sequences and Minimum Contextual Data in a Public Repository During the COVID-19 Pandemic. Front Genet 12, 716541.

Gill, E.E.; Smith, M.L.; Gibson, K.M.; Morishita, K.A.; Lee, A.H.Y.; Falsafi, R.; Graham, J.; Foell, D.; Benseler, S.M.; Ross, C.J.; Luqmani, R.A.; Cabral, D.A.; Hancock, R.E.W.; Brown, K.L. (2021) Different Disease Endotypes in Phenotypically Similar Vasculitides Affecting Small-to-Medium Sized Blood Vessels. Front Immunol 12, 638571.

Ben-Othman, R.; Cai, B.; Liu, A.C.; Varankovich, N.; He, D.; Blimkie, T.M.; Lee, A.H.; Gill, E.E. et al. (2020) Systems Biology Methods Applied to Blood and Tissue for a Comprehensive Analysis of Immune Response to Hepatitis B Vaccine in Adults. Front Immunol 11, 580373.

Bennike, T.B.; Fatou, B.; Angelidou, A.; Diray-Arce, J.; Falsafi, R.; Ford, R.; Gill, E.E. et al. (2020) Preparing for Life: Plasma Proteome Changes and Immune System Development During the First Week of Human Life. Front Immunol 11, 578505.

Hilchie, A.L.; Gill, E.E.; Coombs, M.R.P.; Falsafi, R.; Hancock, R.E.W.; Hoskin, D.W. (2020) MDA-MB-231 Breast Cancer Cells Resistant to Pleurocidin-Family Lytic Peptides Are Chemosensitive and Exhibit Reduced Tumor-Forming Capacity. Biomolecules 10, 9.

Ling, K.M.; Garratt, L.W.; Gill, E.E.; Lee, A.H.Y.; Agudelo-Romero, P.; Sutanto, E.N.; Iosifidis, T.; Rosenow, T.; Turvey, S.E.; Lassmann, T.; Hancock, R.E.W.; Kicic, A.; Stick, S.M. (2020) Rhinovirus Infection Drives Complex Host Airway Molecular Responses in Children With Cystic Fibrosis. Front Immunol 11, 1327.

Ng, S.; Strunk, T.; Lee, A.H.; Gill, E.E.; Falsafi, R.; Woodman, T.; Hibbert, J.; Hancock, R.E.W.; Currie, A. (2020) Whole blood transcriptional responses of very preterm infants during late-onset sepsis. PLoS One 15, e0233841.

Iosifidis, T.; Sutanto, E.N.; Buckley A.G.; Coleman, L.; Gill, E.E. et al. (2020) Aberrant cell migration contributes to defective airway epithelial repair in childhood wheeze. JCI Insight 5, 7

McDaniel, C.T.; Panmanee, W.; Winsor, G.L.; Gill, E. et al. (2020) AB569, a nontoxic chemical tandem that kills major human pathogenic bacteria. Proc Natl Acad Sci U S A 117, 4921.

Yeung, A.T.Y.; Choi, Y.H.; Lee A.H.Y.; Hale, C.; Ponstingl, H.; Pickard, D.; Goulding, D.; Thomas, M.; Gill, E.; Kim, J.K.; Bradley. A.; Hancock, R.E.W.; Dougan, G. (2019) A Genome-Wide Knockout Screen in Human Macrophages Identified Host Factors Modulating Salmonella Infection. mBio 10, 5.

Lee, A.H.; Shannon C.P.; Amenyogbe, N.; Bennike, T.B.; Diray-Arce, J.; Idoko, O.T.; Gill, E.E., et al. (2019) Dynamic molecular changes during the first week of human life follow a robust developmental trajectory. Nat Commun 10, 1092.

Wuerth, K.; Lee A.H.Y.; Falsafi, R.; Gill, E.E.; Hancock, R.E.W. (2019) Characterization of Host Responses during Pseudomonas aeruginosa Acute Infection in the Lungs and Blood and after Treatment with the Synthetic Immunomodulatory Peptide IDR-1002. Infect Immun 87, 1.

Hinshaw, S.J.; Lee, A.H.Y., Gill, E.E.; Hancock, R.E.W. (2018) MetaBridge: Enabling network-based integrative analysis via direct protein interactors of metabolites. Bioinformatics 34, 3225.

Sun, E.; Gill, E.E.; Falsafi, R.; Yeung, A.; Liu, S.; Hancock, R.E.W. (2018) Broad-Spectrum Adaptive Antibiotic Resistance Associated with Pseudomonas aeruginosa Mucin-Dependent Surfing Motility. Antimicrob Agents Chemother 62, 9.

Gill, E.E.; Chan, L.S.; Winsor, G.L.; Dobson, N.; Lo, R.; Ho Sui, S.J.; Dhillon, B.K.; Taylor, P.K.; Shrestha, R.; Spencer, C.; Hancock, R.E.W.; Unrau, P.; Brinkman, F.S.L. (2018) High-throughput detection of RNA processing in bacteria. BMC Genomics 19, 223.

Yeung, A.T.Y; Hale, C.; Lee, A.H.; Gill, E.E.; Bushell, W.; Parry-Smith, D.; Goulding, D.; Pickard, D.; Roumeliotis, T.; Choudhary, J.; Thomson, N.; Skarnes, W.C.; Dougan, G.; Hancock, R.E.W. (2018) Exploiting induced pluripotent stem cell-derived macrophages to unravel host factors influencing Chlamydia trachomatis pathogenesis. Nat Comms 8, 15013.

Yang, H.; Kozicky L.; Saferali, A.; Fung, S.Y.; Afacan, N.; Cai, B.; Falsafi, R.; Gill, E.E.; Liu, M.; Kollmann, T.R.; Hancock, R.E.W.; Sly, L.M.; Turvey, S.E. (2016) Endosomal pH modulation by peptide-gold nanoparticle hybrids enables potent anti-inflammatory activity in phagocytic immune cells. Biomaterials 111, 90-102.

Hancock, R.E.W.; Haney, E.F.; Gill, E.E. (2016) The immunology of host defence peptides: beyond antimicrobial activity. Nat Rev Immunol 16, 321-334.

Xia, J.; Gill, E.E.; Hancock, R.E.W. (2015) NetworkAnalyst for statistical, visual and network-based meta-analysis of gene expression data. Nat Protoc 10, 823-844.

Gill, E.E.; Franco, O.L.; Hancock, R.E.W. (2015) Antibiotic adjuvants: diverse strategies for controlling drug-resistant pathogens. Chem Biol Drug Desc 85, 56-78.

Gill, E.E.; Brinkman, F.S.L. (2010) The proportional lack of archaeal pathogens: Do viruses/phages hold the key? Bioessays 33, 248-254.

Lee, R.C.H; Gill, E.E.; Roy, S.W.; Fast, N.M. (2010) Constrained intron structures in a microsporidian. Mol Biol Evol 27, 1979-1982.

Gill, E.E.; Lee, R.C.H.; Corradi, N.; Grisdale, C.J.; Limpright, V.O.; Keeling, P.J.; Fast, N.M. (2010) Splicing and transcription differ between spores and intracellular life stages in the parasitic microsporidia. Mol Biol Evol 27, 1579-1584.

Gill, E.E.; Fast, N.M. (2008) ESTs from the microsporidian Edhazardia aedis. BMC Genomics 9, 296.

Gill, E.E.; Diaz-Trivino, S.; Barbera, M.J.; Silberman, J.D.; Stechmann, A.; Gaston, D.; Tamas, I.; Roger, A.J. (2007) Novel mitochondrion-related organelles in the anaerobic amoeba Mastigamoeba balamuthi. Mol Microbiol 66, 1306-1320.

Gill, E.E.; Fast, N.M. (2007) Stripped-down DNA repair in a highly reduced parasite. BMC Mol Biol 8, 24.

Gill, E.E.; Fast, N.M. (2006) Assessing the microsporidia-fungi relationship: Combined phylogenetic analysis of eight genes. Gene 375, 103-109.

Simpson, A.G.B.; Gill, E.E.; Callahan, H.A.; Litaker, R.W.; Roger, A.J. (2004) Early evolution within Kinetoplastids (Euglenozoa), and the late emergence of Trypanosomatids. Protist 155, 407-422.